Skip to content

# Tag: scripts

## openark-kit (rev. 170): new tools, new functionality

Development MySQL Analysis Open Source openark kit python Replication scripts December 15, 2010December 15, 2010

I’m pleased to announce a new release of the openark kit. There’s a lot of new functionality inside; following is a brief overview.

The openark kit is a set of utilities for MySQL. They solve everyday maintenance tasks, which may be complicated or time consuming to work by hand.

It’s been a while since the last announced release. Most of my attention was on mycheckpoint, building new features, writing documentation etc. However my own use of openark kit has only increased in the past few months, and there’s new useful solutions to common problems that have been developed.

I’ve used and improved many tools over this time, but doing the final cut, along with proper documentation, took some time. Anyway, here are the highlights:

#### New tool: oak-hook-general-log

oak-hook-general-log hooks up a MySQL server and dumps the general log based on filtering rules, applying to query role or execution plan. It is possible to only dump connect/disconnect entries, queries which make a full table scan, or use temporary tables, or scan more than X number of rows, or…

I’ll write more on this tool shortly.

#### New tool: oak-prepare-shutdown

This tool makes for an orderly and faster shutdown by safely stopping replication, and flushing InnoDB pages to disk prior to shutting down (keeping server available for connections even while attempting to flush dirty pages to disk). A typical use case would be:

>     oak-prepare-shutdown --user=root --ask-pass --socket=/tmp/mysql.sock && /etc/init.d/mysql stop

#### New tool: oak-repeat query

oak-repeat-query repeats executing a given query until some condition holds. The condition can be:

- Number of given iterations has been reached
- Given time has elapsed
- No rows have been affected by query

The tool comes in handy for cleanup jobs, warming up caches, etc. Continue reading » “openark-kit (rev. 170): new tools, new functionality”

## mycheckpoint (rev 208): aggregation tables, enhanced charting, RPM distribution

MySQL Monitoring mycheckpoint Open Source python scripts Web November 8, 2010

Revision 208 of mycheckpoint, a MySQL monitoring solution, has been released. New and updated in this revision:

- Aggregation tables: aggregated data makes for fast reports on previously slow queries.
- Enhanced charting: interactive charts now present time stamps dynamically (see demo); “Zoom in” charts are available (see demo) on mycheckpoint‘s HTTP server.
- RPM distribution: a “noarch” RPM mycheckpoint build is now available.
- Initial work on formalizing test environment

mycheckpoint celebrates one year of existence!

#### Aggregation tables

I really wanted to avoid using these: everything was so more beautiful with one single dataset and dozens of supporting views (OK, the views themselves are hardly “beautiful”).

However it was impossible (for my level of expertise) to optimize query performance what with all those views on per-hour and per-day aggregation. The GROUP BYs and the JOINs did not make it possible for condition pushdown (i.e. using MERGE algorithm) where desired.

As result, mycheckpoint now manages aggregation tables: per-hour and per-day. The impact on sample taking is neglect able (making for two additional fast queries), but the impact on reading aggregated data is overwhelming. Generating a HTML full report could take a few minutes to complete. It now returns in no time. This makes charting more attractive, and allows for enhanced charting, such as zooming in on charts, as described following.

Aggregation tables will automatically be created and retroactively populated upon using revision 208. There’s nothing special to do; be advised that for one single execution of mycheckpoint, many INSERT queries are going to be executed. Shouldn’t take more than a couple minutes on commodity hardware and a few months of history.

It is possible to disable aggregation tables, or make for a complete rebuild of tables; by default, though, aggregation is ON.

#### Enhanced charting

Two enhancements here: Continue reading » “mycheckpoint (rev 208): aggregation tables, enhanced charting, RPM distribution”

## Thoughts and ideas for Online Schema Change

Development MySQL Development Indexing INFORMATION_SCHEMA InnoDB Open Source openark kit Opinions python Schema scripts Triggers October 7, 2010October 7, 2010

Here’s a few thoughts on current status and further possibilities for Facebook’s Online Schema Change (OSC) tool. I’ve had these thoughts for months now, pondering over improving oak-online-alter-table but haven’t got around to implement them nor even write them down. Better late than never.

The tool has some limitations. Some cannot be lifted, some could. Quoting from the announcement and looking at the code, I add a few comments. I conclude with a general opinion on the tool’s abilities.

#### “The original table must have PK. Otherwise an error is returned.”

This restriction could be lifted: it’s enough that the table has a UNIQUE KEY. My original oak-online-alter-table handled that particular case. As far as I see from their code, the Facebook code would work just as well with any unique key.

However, this restriction is of no real interest. As we’re mostly interested in InnoDB tables, and since any InnoDB table should have a PRIMARY KEY, we shouldn’t care too much.

#### “No foreign keys should exist. Otherwise an error is returned.”

Tricky stuff. With oak-online-alter-table, changes to the original table were immediately reflected in the ghost table. With InnoDB tables, that meant same transaction. And although I never got to update the text and code, there shouldn’t be a reason for not using child-side foreign keys (the child-side is the table on which the FK constraint is defined).

The Facebook patch works differently: it captures changes and writes them to a delta table, to be later (asynchronously) analyzed and make for a replay of actions on the ghost table. Continue reading » “Thoughts and ideas for Online Schema Change”

## mycheckpoint (rev. 190): HTTP server; interactive charts

MySQL Monitoring mycheckpoint Open Source python scripts Web September 7, 2010

Revision 190 of mycheckpoint, a MySQL monitoring solution, has been released. New and updated in this revision:

- HTTP server: mycheckpoint can now act as a web server. Point your browser and start browsing through HTML reports. See mock up demo.
- Interactive charts: HTML line charts are now interactive, presenting with accurate data as you move over them. See sample.
- Enhanced auto-deploy: now auto-recognizing failed upgrades.
- Reduced footprint: much code taken out of the views, leading to faster loading times.
- Better configuration file use: now supporting all command line options in config file.
- Remote host monitoring accessibility: now supporting complete configurable accessibility details.
- Bug fixes: thanks to the bug reporters!

mycheckpoint is free, simple, easy to use (now easier with HTTP server) and useful. I encourage you to try it out: even compared with other existing and emerging monitoring tools, I believe you will find it a breeze; it’s low impact and lightness appealing; it’s alerts mechanism assuring; its geeky SQL-based nature with ability to drill down to fine details — geeky-kind-of-attractive.

#### HTTP server

You can now run mycheckpoint in http mode:

>     bash$ mycheckpoint http

mycheckpoint will listen on port 12306, and will present you with easy browsing through the reports of your mycheckpoint databases. Continue reading » “mycheckpoint (rev. 190): HTTP server; interactive charts”

## mylvmbackup HOWTO: minimal privileges & filesystem copy

MySQL Backup Linux Open Source scripts Security August 17, 2010August 17, 2010

This HOWTO discusses two (unrelated) issues with mylvmbackup:

- The minimal privileges required to take MySQL backups with mylvmbackup.
- Making (non compressed) file system copy of one’s data files.

#### Minimal privileges

Some just give mylvmbackup the root account, which is far too permissive. We now consider what the minimal requirements of mylvmbackup are.

The queries mylvmbackup issues are:

- FLUSH TABLES
- FLUSH TABLES WITH READ LOCK
- SHOW MASTER STATUS
- SHOW SLAVE STATUS
- UNLOCK TABLES

Both SHOW MASTER STATUS & SHOW SLAVE STATUS require either the SUPER or REPLICATION CLIENT privilege. Since SUPER is more powerful, we choose REPLICATION CLIENT.

The FLUSH TABLES * and UNLOCK TABLES require the RELOAD privilege.

However, we are not done yet. mylvmbackup connects to the mysql database, which means we must also have some privilege there, too. We choose the SELECT privilege.

Continue reading » “mylvmbackup HOWTO: minimal privileges & filesystem copy”

## Another Python MySQL template

MySQL Open Source python scripts August 11, 2010

Following up on Matt Reid’s simple python, mysql connection and iteration, I would like to share one of my own, which is the base for mycheckpoint & openark kit scripts.

It is oriented to provide with clean access to the data: the user is not expected to handle cursors and connections. Result sets are returned as python lists and dictionaries. It is also config file aware and comes with built in command line options.

I hope it comes to use: my.py

## Tips for taking MySQL backups using LVM

MySQL Backup Linux scripts August 3, 2010August 12, 2010

LVM uses copy-on-write to implement snapshots. Whenever you’re writing data to some page, LVM copies the original page (the way it looked like when the snapshot was taken) to the snapshot volume. The snapshot volume must be large enough to accommodate all pages written to for the duration of the snapshot’s lifetime. In other words, you must be able to copy the data somewhere outside (tape, NFS, rsync, etc.) in less time than it would take for the snapshot to fill up.

While LVM allows for hot backups of MySQL, it still poses an impact on the disks. An LVM snapshot backup may not go unnoticed by the MySQL users.

Some general guidelines for making life easier with LVM backups follow.

#### Lighter, longer snapshots

If you’re confident that you have enough space on your snapshot volume, you may take the opportunity to make for a longer backup time. Why? Because you would then be able to reduce the stress from the file system. Use ionice when copying your data from the snapshot volume:

>     ionice -c 2 cp -R /mnt/mysql_snapshot /mnt/backup/daily/20100719/

[Update: this is only on the cfq I/O scheduler; thanks, Vojtech]

#### Are you running out of space?

Monitor snapshot’s allocated size: if there’s just one snapshot, do it like this: Continue reading » “Tips for taking MySQL backups using LVM”

## mycheckpoint (rev. 132): custom monitoring, custom charts, process list dump

MySQL Graphs Monitoring mycheckpoint python scripts June 4, 2010June 4, 2010

Revision 132 of mycheckpoint has been released. New and updated in this revision:

- Custom monitoring: monitoring & charting for user defined queries
- HTML reports for custom monitoring
- Process list dump upon alert notifications

#### Custom monitoring & charts

Custom monitoring allows the user to supply with a query, the results of which will be monitored.

That is, mycheckpoint monitors the status variables, replication status, OS metrics. But it cannot by itself monitor one’s application. Which is why a user may supply with such query as:

>     SELECT COUNT(*) FROM shopping_cart WHERE is_pending=1

Such a query will tell an online store how many customers are in the midst of shopping. There is no argument that this number is worth monitoring for. Given the above query, mycheckpoint will execute it per sample, and store the query’s result along with all sampled data, to be then aggregated by complex views to answer for:

- What was the value per given sample?
- What is the value difference for each sample?
- What is the change per second, i.e. the rate?

mycheckpoint goes one step forward, and explicity records another metric:

- How much time did it take to take that sample?

Continue reading » “mycheckpoint (rev. 132): custom monitoring, custom charts, process list dump”

## EXPLAIN: missing db info

MySQL Analysis Execution plan logs openark kit scripts May 11, 2010

I’m further developing a general log hook, which can stream queries from the general log.

A particular direction I’m taking is to filter queries by their type of actions. For example, the tool (oak-hook-general-log) can be instructed to only stream out those queries which involve creation of a temporary table; or those which cause for a filesort, or full index scan, etc.

This is done by evaluating of query execution plans on the fly. I suspect the MySQL query analyzer roughly does the same (as a small part of what it does).

It’s almost nothing one cannot do with sed/awk. However, I bumped into a couple of problems:

1. The general log (and the mysql.general_log table, in particular) does not indicate the particular database one is using for the query. Since slow log does indicate this data, I filed a bug on this. I currently solve this by crossing connection id with the process list, where the current database is listed. It’s shaky, but mostly works.
2. Just realized: there’s no DB info in the EXPLAIN output! It’s weird, since I’ve been EXPLAINing queries for years now. But I’ve always had the advantage of knowing the schema used: either because I was manually executing the query on a known schema, or mk-query-digest was kind enough to let me know.

Continue reading » “EXPLAIN: missing db info”

## oak-hook-general-log: streaming general log

MySQL logs openark kit python scripts March 21, 2010March 21, 2010

I’m seeking input on a new openark kit utility I’ve started to implement.

The tool, oak-hook-general-log, will hook up to a MySQL (>= 5.1) server, and stream the general log into standard output. It looks like this:

>     bash$ python src/oak/oak-hook-general-log.py --socket=/tmp/mysql.sock --user=root
>     2010-03-21 10:18:42     root[root] @ localhost []       79      1       Query   SELECT COUNT(*) FROM City
>     2010-03-21 10:18:48     root[root] @ localhost []       79      1       Query   DELETE FROM City WHERE id=1000
>     2010-03-21 10:18:54     root[root] @ localhost []       79      1       Query   SHOW PROCESSLIST
>     2010-03-21 10:19:06     root[root] @ localhost []       79      1       Quit
>     2010-03-21 10:19:07     root[root] @ localhost []       93      1       Connect root@localhost on
>     2010-03-21 10:19:07     root[root] @ localhost []       93      1       Query   select @@version_comment limit 1
>     2010-03-21 10:22:33     root[root] @ localhost []       93      1       Query   SELECT City.Name, Country.Name FROM Country JOIN City ON Country.Capit
>     2010-03-21 10:22:58     root[root] @ localhost []       93      1       Quit

Since output is written to stdout, one can further:

>     bash$ python src/oak/oak-hook-general-log.py --socket=/tmp/mysql.sock --user=root | grep Connect
>     bash$ python src/oak/oak-hook-general-log.py --socket=/tmp/mysql.sock --user=root | grep webuser@webhost

What the tool does is to enable table logs, and periodically rotate the mysql.general_log table, read and dump its content.

Continue reading » “oak-hook-general-log: streaming general log”